Automated Action efba5e489a Fix database permissions issues by using more accessible paths
- Updated database configuration to use /app/storage/db directory
- Added robust directory and file permission handling
- Implemented fallback paths for database location
- Enhanced Alembic migration script with retry logic and clear error diagnostics
- Updated the README with the new database path information
2025-05-16 12:47:17 +00:00

300 lines
10 KiB
Python

from logging.config import fileConfig
import os
import sys
import logging
import sqlite3
from sqlalchemy import engine_from_config, event
from sqlalchemy import pool
from alembic import context
# Add the parent directory to the Python path
sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), "..")))
# this is the Alembic Config object, which provides
# access to the values within the .ini file in use.
config = context.config
# Interpret the config file for Python logging.
# This line sets up loggers basically.
fileConfig(config.config_file_name)
# Setup logger
logger = logging.getLogger("alembic.env")
# Ensure database directory exists and is writable
db_url = config.get_main_option("sqlalchemy.url")
if db_url.startswith("sqlite:///"):
# Extract the path part after sqlite:///
if db_url.startswith("sqlite:////"): # Absolute path (4 slashes)
db_path = db_url[len("sqlite:///") :]
else: # Relative path (3 slashes)
db_path = db_url[len("sqlite:///") :]
# Get the directory path
db_dir = os.path.dirname(db_path)
logger.info(f"Database URL: {db_url}")
logger.info(f"Database path: {db_path}")
logger.info(f"Database directory: {db_dir}")
# Define alternate paths to try if the primary path isn't writable
alternate_paths = [
"/app/storage/db/db.sqlite", # Primary alternate
os.path.join(os.path.expanduser("~"), "db.sqlite"), # Home directory
"/tmp/taskmanager/db.sqlite", # Fallback to tmp
]
# Try to create the main directory first
db_created = False
for attempt_path in [db_path] + alternate_paths:
if db_created:
break
try:
# Get directory part
current_dir = os.path.dirname(attempt_path)
# Create directory if it doesn't exist
os.makedirs(current_dir, exist_ok=True)
logger.info(f"Ensured directory exists: {current_dir}")
# Set directory permissions if possible (755 = rwxr-xr-x)
try:
import stat
dir_mode = (
stat.S_IRWXU
| stat.S_IRGRP
| stat.S_IXGRP
| stat.S_IROTH
| stat.S_IXOTH
)
os.chmod(current_dir, dir_mode)
logger.info(f"Set directory permissions on {current_dir}")
except Exception as chmod_err:
logger.warning(f"Could not set directory permissions: {chmod_err}")
# Check if the directory is writable
if not os.access(current_dir, os.W_OK):
logger.warning(
f"Directory {current_dir} exists but is not writable, trying next path"
)
continue
# Try to create/access the database file
try:
# Create an empty file if it doesn't exist
if not os.path.exists(attempt_path):
with open(attempt_path, "wb") as f:
f.write(b"") # Write empty content
logger.info(f"Created database file: {attempt_path}")
# Try to set file permissions (666 = rw-rw-rw-)
try:
file_mode = (
stat.S_IRUSR
| stat.S_IWUSR
| stat.S_IRGRP
| stat.S_IWGRP
| stat.S_IROTH
| stat.S_IWOTH
)
os.chmod(attempt_path, file_mode)
logger.info(f"Set file permissions on {attempt_path}")
except Exception as chmod_err:
logger.warning(f"Could not set file permissions: {chmod_err}")
# Verify file is writable
if not os.access(attempt_path, os.W_OK):
logger.warning(
f"File {attempt_path} exists but is not writable, trying next path"
)
continue
# Test direct SQLite connection
try:
conn = sqlite3.connect(attempt_path)
conn.execute("SELECT 1")
conn.close()
logger.info(
f"Successfully connected to SQLite database at {attempt_path}"
)
# If this isn't the original path, update the config
if attempt_path != db_path:
new_url = f"sqlite:///{attempt_path}"
logger.info(f"Updating database URL to: {new_url}")
config.set_main_option("sqlalchemy.url", new_url)
db_path = attempt_path # Update the db_path for diagnostics
db_created = True
break
except Exception as e:
logger.error(f"Direct SQLite connection failed: {e}")
raise
except Exception as e:
logger.error(f"Could not access database file: {e}")
raise
except Exception as e:
logger.error(f"Could not create/access database at {attempt_path}: {e}")
# Continue to next path
if not db_created:
logger.error("Failed to create database in any of the attempted locations")
# We'll continue anyway to show more diagnostic info in errors
# add your model's MetaData object here
# for 'autogenerate' support
from app.db.base import Base # noqa
target_metadata = Base.metadata
# other values from the config, defined by the needs of env.py,
# can be acquired:
# my_important_option = config.get_main_option("my_important_option")
# ... etc.
def run_migrations_offline():
"""Run migrations in 'offline' mode.
This configures the context with just a URL
and not an Engine, though an Engine is acceptable
here as well. By skipping the Engine creation
we don't even need a DBAPI to be available.
Calls to context.execute() here emit the given string to the
script output.
"""
try:
url = config.get_main_option("sqlalchemy.url")
logger.info(f"Running offline migrations using URL: {url}")
context.configure(
url=url,
target_metadata=target_metadata,
literal_binds=True,
dialect_opts={"paramstyle": "named"},
)
with context.begin_transaction():
logger.info("Running offline migrations...")
context.run_migrations()
logger.info("Offline migrations completed successfully")
except Exception as e:
logger.error(f"Offline migration error: {e}")
# Re-raise the error
raise
def run_migrations_online():
"""Run migrations in 'online' mode.
In this scenario we need to create an Engine
and associate a connection with the context.
"""
try:
# Get config and URL
cfg = config.get_section(config.config_ini_section)
url = cfg.get("sqlalchemy.url")
logger.info(f"Running online migrations using URL: {url}")
# Create engine with retry logic
max_retries = 3
last_error = None
for retry in range(max_retries):
try:
logger.info(f"Connection attempt {retry + 1}/{max_retries}")
connectable = engine_from_config(
cfg,
prefix="sqlalchemy.",
poolclass=pool.NullPool,
)
# Configure SQLite for better reliability
@event.listens_for(connectable, "connect")
def setup_sqlite_connection(dbapi_connection, connection_record):
dbapi_connection.execute("PRAGMA journal_mode=WAL")
dbapi_connection.execute("PRAGMA synchronous=NORMAL")
# Connect and run migrations
with connectable.connect() as connection:
logger.info("Connection successful")
context.configure(
connection=connection, target_metadata=target_metadata
)
with context.begin_transaction():
logger.info("Running migrations...")
context.run_migrations()
logger.info("Migrations completed successfully")
return # Success, exit the function
except Exception as e:
last_error = e
logger.error(f"Migration attempt {retry + 1} failed: {e}")
if retry < max_retries - 1:
import time
wait_time = (retry + 1) * 2 # Exponential backoff
logger.info(f"Retrying in {wait_time} seconds...")
time.sleep(wait_time)
# If we get here, all retries failed
raise Exception(
f"Failed to run migrations after {max_retries} attempts: {last_error}"
)
except Exception as e:
logger.error(f"Migration error: {e}")
# Print diagnostic information
from sqlalchemy import __version__ as sa_version
logger.error(f"SQLAlchemy version: {sa_version}")
# Get directory info
if url and url.startswith("sqlite:///"):
if url.startswith("sqlite:////"): # Absolute path
db_path = url[len("sqlite:///") :]
else: # Relative path
db_path = url[len("sqlite:///") :]
db_dir = os.path.dirname(db_path)
# Directory permissions
if os.path.exists(db_dir):
stats = os.stat(db_dir)
logger.error(f"DB directory permissions: {oct(stats.st_mode)}")
logger.error("DB directory exists: Yes")
logger.error(f"DB directory is writable: {os.access(db_dir, os.W_OK)}")
else:
logger.error("DB directory exists: No")
# File permissions if file exists
if os.path.exists(db_path):
stats = os.stat(db_path)
logger.error(f"DB file permissions: {oct(stats.st_mode)}")
logger.error("DB file exists: Yes")
logger.error(f"DB file is writable: {os.access(db_path, os.W_OK)}")
else:
logger.error("DB file exists: No")
# Re-raise the error
raise
if context.is_offline_mode():
run_migrations_offline()
else:
run_migrations_online()